Skip to content
Precision for Medicine

Case Study: Biomarker-Driven Enrollment Using Notch Mutation Targeting

Case Study: Biomarker-Driven Enrollment Using Notch Mutation Targeting

Biomarker-driven trials are transforming oncology research, enabling targeted therapies for genetically defined populations. Precision partnered with a biotech sponsor developing a Notch-targeted therapy to manage two concurrent Phase 2 trials—one in Adenoid Cystic Carcinoma (ACC) and one in triple-negative breast cancer (TNBC).

Study Type

Phase 2

Therapeutic Area

Oncology

Indication

ACC with activating Notch mutations

Geography

US, Canada, EU

Sites

24 total (17 US/Canada, 7 EU)

Precision’s Role

End-to-end operational support including site selection, biomarker strategy, NGS coordination, and regulatory guidance

Key Challenges

Biomarker-driven eligibility, NGS coordination, regulatory risk determination, and minimizing screen failures


This case study focuses on the ACC trial, which required identifying patients with activating Notch mutations through next-generation sequencing (NGS). The study was split into two parts:

  • Part 1: 35+ patients enrolled over 12 months
  • Part 2: 50+ additional patients targeted over the following 12 months

  • Strategies to Elevate Your Study at Saturated Sites

    Strategies to Elevate Your Study at Saturated Sites

    Discover

 

Strategic Design and Site Selection

Precision’s success began with identifying the right sites—those capable of performing NGS testing either internally or through a vendor. This capability was critical to minimizing screen failures and accelerating enrollment.

Key considerations included:

  • Targeting Notch 1–4 mutations
  • Implementing pre-screening informed consent (ICF) to reduce screen failures
  • Navigating Significant Risk Determination as part of regulatory submission
  • Sponsor review and approval of NGS results prior to patient enrollment
Precision worked closely with sites to coordinate sample collection and pre-screening logistics, including the use of standardized kits and early activation of the NGS vendor.

 

Lessons Learned and Operational Wins

Despite the complexity of biomarker-driven enrollment, the ACC trial exceeded expectations:
  • Enrollment rates were better than anticipated, thanks to strategic site selection and pre-screening
  • NGS testing was streamlined, with vendor activation completed upfront
  • Site coordination was optimized, enabling consistent sample handling and data flow
  • Regulatory alignment was achieved early, avoiding delays in patient entry

Precision’s proactive approach ensured that biomarker testing did not become a bottleneck, but rather a catalyst for efficient enrollment.

Precision’s Path to Biomarker-Driven Enrollment in Rare Oncology

The ACC trial demonstrated that biomarker-driven studies can succeed with the right infrastructure, planning, and site partnerships. Precision’s experience in coordinating NGS workflows, managing regulatory complexity, and supporting site operations was instrumental in achieving strong enrollment and data quality.

  • Explore

    Rare Disease CRO Services

    Across the spectrum of rare and orphan diseases, including ultra-rare indications, Precision for Medicine excels at providing rarefied solutions to solve the most complex of challenges.
    Explore
  • Explore

    Oncology CRO Services

    Expedite your targeted oncology therapy with a CRO rooted in developing novel therapies and delivering commercial success.
    Explore
  • Explore

    Speak with an Expert

    Ready to plan your upcoming program or project? Reach out to our team and we will put you in contact with the right person.
    Explore

 

Frequently Asked Questions

Why is biomarker-driven clinical trial enrollment challenging?

It requires precise genetic testing, coordination between labs and sites, and regulatory alignment to ensure patients meet molecular eligibility criteria.

How did Precision support NGS testing in this rare disease study?

By selecting and activating a vendor early, providing sample kits, and working with sites capable of internal or external NGS testing. 

What was the role of pre-screening consent for this clinical program?

It allowed sites to assess biomarker status before full enrollment, reducing screen failures and improving efficiency. 

What were the key learnings from this oncology study?

Early planning, biomarker strategy integration, and site readiness are essential for success in precision oncology trials. Pre-screening and vendor coordination can dramatically improve enrollment outcomes.